feat: Implement combined test coverage for main project and CLI

- Add combined coverage script to merge lcov reports - Update GitHub workflows to generate and upload combined coverage - Install missing CLI dependencies (ora, yaml, cli-table3, mock-fs) - Add initial tests for SessionManager and IssueHandler - Exclude type-only files from coverage metrics - Update jest config to exclude type files from coverage This ensures Codecov receives coverage data from both the main project and CLI subdirectory, providing accurate overall project coverage metrics.
2025-06-03 22:43:20 +00:00
parent 8da021bb00
commit 346199ebbd
13 changed files with 4901 additions and 193 deletions
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -22,12 +22,18 @@ jobs:
        cache: npm
    - run: npm ci
    - run: npm run lint:check
-    - run: npm run test:ci
+    - name: Install CLI dependencies
+      working-directory: ./cli
+      run: npm ci
+    - name: Generate combined coverage
+      run: ./scripts/combine-coverage.js
      env:
        NODE_ENV: test
    - uses: codecov/codecov-action@v5
      with:
        token: ${{ secrets.CODECOV_TOKEN }}
+        directory: ./coverage-combined
+        fail_ci_if_error: true

  security:
    runs-on: ubuntu-latest
--- a/.github/workflows/pull-request.yml
+++ b/.github/workflows/pull-request.yml
@@ -20,12 +20,18 @@ jobs:
    - run: npm run format:check
    - run: npm run lint:check
    - run: npm run typecheck
-    - run: npm run test:ci
+    - name: Install CLI dependencies
+      working-directory: ./cli
+      run: npm ci
+    - name: Generate combined coverage
+      run: ./scripts/combine-coverage.js
      env:
        NODE_ENV: test
    - uses: codecov/codecov-action@v5
      with:
        token: ${{ secrets.CODECOV_TOKEN }}
+        directory: ./coverage-combined
+        fail_ci_if_error: true

  security:
    runs-on: ubuntu-latest
--- a/analyze-combined-coverage.js
+++ b/analyze-combined-coverage.js
@@ -0,0 +1,83 @@
+#!/usr/bin/env node
+
+const fs = require('fs');
+const path = require('path');
+
+// Read combined lcov.info
+const lcovPath = path.join(__dirname, 'coverage-combined', 'lcov.info');
+if (!fs.existsSync(lcovPath)) {
+  console.error('No coverage-combined/lcov.info file found. Run npm run test:combined-coverage first.');
+  process.exit(1);
+}
+
+const lcovContent = fs.readFileSync(lcovPath, 'utf8');
+const lines = lcovContent.split('\n');
+
+let currentFile = null;
+const fileStats = {};
+let totalLines = 0;
+let coveredLines = 0;
+
+for (const line of lines) {
+  if (line.startsWith('SF:')) {
+    currentFile = line.substring(3);
+    if (!fileStats[currentFile]) {
+      fileStats[currentFile] = { lines: 0, covered: 0, functions: 0, functionsHit: 0 };
+    }
+  } else if (line.startsWith('DA:')) {
+    const [lineNum, hits] = line.substring(3).split(',').map(Number);
+    if (currentFile) {
+      fileStats[currentFile].lines++;
+      totalLines++;
+      if (hits > 0) {
+        fileStats[currentFile].covered++;
+        coveredLines++;
+      }
+    }
+  }
+}
+
+const overallCoverage = (coveredLines / totalLines) * 100;
+
+console.log('\n=== Combined Coverage Analysis ===\n');
+console.log(`Total Lines: ${totalLines}`);
+console.log(`Covered Lines: ${coveredLines}`);
+console.log(`Overall Coverage: ${overallCoverage.toFixed(2)}%`);
+console.log(`Target: 80%`);
+console.log(`Status: ${overallCoverage >= 80 ? '✅ PASSED' : '❌ FAILED'}\n`);
+
+// Break down by directory
+const srcFiles = Object.entries(fileStats).filter(([file]) => file.startsWith('src/'));
+const cliFiles = Object.entries(fileStats).filter(([file]) => file.startsWith('cli/'));
+
+const srcStats = srcFiles.reduce((acc, [, stats]) => ({
+  lines: acc.lines + stats.lines,
+  covered: acc.covered + stats.covered
+}), { lines: 0, covered: 0 });
+
+const cliStats = cliFiles.reduce((acc, [, stats]) => ({
+  lines: acc.lines + stats.lines,
+  covered: acc.covered + stats.covered
+}), { lines: 0, covered: 0 });
+
+console.log('=== Coverage by Component ===');
+console.log(`Main src/: ${((srcStats.covered / srcStats.lines) * 100).toFixed(2)}% (${srcStats.covered}/${srcStats.lines} lines)`);
+console.log(`CLI:       ${((cliStats.covered / cliStats.lines) * 100).toFixed(2)}% (${cliStats.covered}/${cliStats.lines} lines)`);
+
+// Show files with lowest coverage
+console.log('\n=== Files with Lowest Coverage ===');
+const sorted = Object.entries(fileStats)
+  .map(([file, stats]) => ({
+    file,
+    coverage: (stats.covered / stats.lines) * 100,
+    lines: stats.lines,
+    covered: stats.covered
+  }))
+  .sort((a, b) => a.coverage - b.coverage)
+  .slice(0, 10);
+
+sorted.forEach(({ file, coverage, covered, lines }) => {
+  console.log(`${file.padEnd(60)} ${coverage.toFixed(2).padStart(6)}% (${covered}/${lines})`);
+});
+
+process.exit(overallCoverage >= 80 ? 0 : 1);
--- a/analyze-coverage.js
+++ b/analyze-coverage.js
@@ -0,0 +1,83 @@
+#!/usr/bin/env node
+
+const fs = require('fs');
+const path = require('path');
+
+// Read lcov.info
+const lcovPath = path.join(__dirname, 'coverage', 'lcov.info');
+if (!fs.existsSync(lcovPath)) {
+  console.error('No coverage/lcov.info file found. Run npm test:coverage first.');
+  process.exit(1);
+}
+
+const lcovContent = fs.readFileSync(lcovPath, 'utf8');
+const lines = lcovContent.split('\n');
+
+let currentFile = null;
+const fileStats = {};
+let totalLines = 0;
+let coveredLines = 0;
+
+for (const line of lines) {
+  if (line.startsWith('SF:')) {
+    currentFile = line.substring(3);
+    if (!fileStats[currentFile]) {
+      fileStats[currentFile] = { lines: 0, covered: 0, functions: 0, functionsHit: 0 };
+    }
+  } else if (line.startsWith('DA:')) {
+    const [lineNum, hits] = line.substring(3).split(',').map(Number);
+    if (currentFile) {
+      fileStats[currentFile].lines++;
+      totalLines++;
+      if (hits > 0) {
+        fileStats[currentFile].covered++;
+        coveredLines++;
+      }
+    }
+  } else if (line.startsWith('FNF:')) {
+    if (currentFile) {
+      fileStats[currentFile].functions = parseInt(line.substring(4));
+    }
+  } else if (line.startsWith('FNH:')) {
+    if (currentFile) {
+      fileStats[currentFile].functionsHit = parseInt(line.substring(4));
+    }
+  }
+}
+
+console.log('\n=== Coverage Analysis ===\n');
+console.log(`Total Lines: ${totalLines}`);
+console.log(`Covered Lines: ${coveredLines}`);
+console.log(`Overall Coverage: ${((coveredLines / totalLines) * 100).toFixed(2)}%\n`);
+
+console.log('=== File Breakdown ===\n');
+const sortedFiles = Object.entries(fileStats).sort((a, b) => {
+  const coverageA = (a[1].covered / a[1].lines) * 100;
+  const coverageB = (b[1].covered / b[1].lines) * 100;
+  return coverageA - coverageB;
+});
+
+for (const [file, stats] of sortedFiles) {
+  const coverage = ((stats.covered / stats.lines) * 100).toFixed(2);
+  console.log(`${file.padEnd(60)} ${coverage.padStart(6)}% (${stats.covered}/${stats.lines} lines)`);
+}
+
+// Check if CLI coverage is included
+console.log('\n=== Coverage Scope Analysis ===\n');
+const cliFiles = sortedFiles.filter(([file]) => file.includes('cli/'));
+const srcFiles = sortedFiles.filter(([file]) => file.startsWith('src/'));
+
+console.log(`Main src/ files: ${srcFiles.length}`);
+console.log(`CLI files: ${cliFiles.length}`);
+
+if (cliFiles.length > 0) {
+  console.log('\nCLI files found in coverage:');
+  cliFiles.forEach(([file]) => console.log(`  - ${file}`));
+}
+
+// Check for any unexpected files
+const otherFiles = sortedFiles.filter(([file]) => !file.startsWith('src/') && !file.includes('cli/'));
+if (otherFiles.length > 0) {
+  console.log('\nOther files in coverage:');
+  otherFiles.forEach(([file]) => console.log(`  - ${file}`));
+}
--- a/calculate-codecov-match.js
+++ b/calculate-codecov-match.js
@@ -0,0 +1,99 @@
+#!/usr/bin/env node
+
+const fs = require('fs');
+const path = require('path');
+
+// Coverage data from the test output
+const coverageData = {
+  'src/index.ts': { statements: 92.64, branches: 78.94, functions: 85.71, lines: 92.64 },
+  'src/controllers/githubController.ts': { statements: 69.65, branches: 64.47, functions: 84.61, lines: 69.2 },
+  'src/core/webhook/WebhookProcessor.ts': { statements: 100, branches: 92.3, functions: 100, lines: 100 },
+  'src/core/webhook/WebhookRegistry.ts': { statements: 97.77, branches: 100, functions: 100, lines: 97.67 },
+  'src/core/webhook/constants.ts': { statements: 100, branches: 100, functions: 100, lines: 100 },
+  'src/core/webhook/index.ts': { statements: 0, branches: 100, functions: 0, lines: 0 },
+  'src/providers/claude/ClaudeWebhookProvider.ts': { statements: 77.41, branches: 46.66, functions: 100, lines: 77.41 },
+  'src/providers/claude/index.ts': { statements: 100, branches: 100, functions: 0, lines: 100 },
+  'src/providers/claude/handlers/OrchestrationHandler.ts': { statements: 95.65, branches: 75, functions: 100, lines: 95.65 },
+  'src/providers/claude/handlers/SessionHandler.ts': { statements: 96.66, branches: 89.28, functions: 100, lines: 96.66 },
+  'src/providers/claude/services/SessionManager.ts': { statements: 6.06, branches: 0, functions: 0, lines: 6.06 },
+  'src/providers/claude/services/TaskDecomposer.ts': { statements: 96.87, branches: 93.75, functions: 100, lines: 96.66 },
+  'src/providers/github/GitHubWebhookProvider.ts': { statements: 95.45, branches: 90.62, functions: 100, lines: 95.45 },
+  'src/providers/github/index.ts': { statements: 100, branches: 100, functions: 100, lines: 100 },
+  'src/providers/github/handlers/IssueHandler.ts': { statements: 30.43, branches: 0, functions: 0, lines: 30.43 },
+  'src/routes/github.ts': { statements: 100, branches: 100, functions: 100, lines: 100 },
+  'src/routes/webhooks.ts': { statements: 92.1, branches: 100, functions: 57.14, lines: 91.66 },
+  'src/services/claudeService.ts': { statements: 85.62, branches: 66.17, functions: 100, lines: 86.66 },
+  'src/services/githubService.ts': { statements: 72.22, branches: 78.57, functions: 75, lines: 71.93 },
+  'src/types/claude.ts': { statements: 0, branches: 100, functions: 100, lines: 0 },
+  'src/types/environment.ts': { statements: 0, branches: 0, functions: 0, lines: 0 },
+  'src/types/index.ts': { statements: 0, branches: 0, functions: 0, lines: 0 },
+  'src/utils/awsCredentialProvider.ts': { statements: 65.68, branches: 59.25, functions: 54.54, lines: 65.68 },
+  'src/utils/logger.ts': { statements: 51.61, branches: 47.36, functions: 100, lines: 51.72 },
+  'src/utils/sanitize.ts': { statements: 100, branches: 100, functions: 100, lines: 100 },
+  'src/utils/secureCredentials.ts': { statements: 54.28, branches: 70.58, functions: 33.33, lines: 54.28 },
+  'src/utils/startup-metrics.ts': { statements: 100, branches: 100, functions: 100, lines: 100 }
+};
+
+// Calculate different scenarios
+console.log('\n=== Coverage Analysis - Matching Codecov ===\n');
+
+// Scenario 1: Exclude type definition files
+const withoutTypes = Object.entries(coverageData)
+  .filter(([file]) => !file.includes('/types/'))
+  .reduce((acc, [file, data]) => {
+    acc[file] = data;
+    return acc;
+  }, {});
+
+const avgWithoutTypes = calculateAverage(withoutTypes);
+console.log(`1. Without type files: ${avgWithoutTypes.toFixed(2)}%`);
+
+// Scenario 2: Exclude files with 0% coverage
+const withoutZeroCoverage = Object.entries(coverageData)
+  .filter(([file, data]) => data.lines > 0)
+  .reduce((acc, [file, data]) => {
+    acc[file] = data;
+    return acc;
+  }, {});
+
+const avgWithoutZero = calculateAverage(withoutZeroCoverage);
+console.log(`2. Without 0% coverage files: ${avgWithoutZero.toFixed(2)}%`);
+
+// Scenario 3: Exclude specific low coverage files
+const excludeLowCoverage = Object.entries(coverageData)
+  .filter(([file]) => {
+    return !file.includes('/types/') && 
+           !file.includes('SessionManager.ts') &&
+           !file.includes('IssueHandler.ts');
+  })
+  .reduce((acc, [file, data]) => {
+    acc[file] = data;
+    return acc;
+  }, {});
+
+const avgExcludeLow = calculateAverage(excludeLowCoverage);
+console.log(`3. Without types, SessionManager, IssueHandler: ${avgExcludeLow.toFixed(2)}%`);
+
+// Scenario 4: Statement coverage only (what codecov might be reporting)
+const statementOnly = calculateStatementAverage(coverageData);
+console.log(`4. Statement coverage only: ${statementOnly.toFixed(2)}%`);
+
+// Show which files have the biggest impact
+console.log('\n=== Files with lowest coverage ===');
+const sorted = Object.entries(coverageData)
+  .sort((a, b) => a[1].lines - b[1].lines)
+  .slice(0, 10);
+
+sorted.forEach(([file, data]) => {
+  console.log(`${file.padEnd(60)} ${data.lines.toFixed(2)}%`);
+});
+
+function calculateAverage(data) {
+  const values = Object.values(data).map(d => d.lines);
+  return values.reduce((sum, val) => sum + val, 0) / values.length;
+}
+
+function calculateStatementAverage(data) {
+  const values = Object.values(data).map(d => d.statements);
+  return values.reduce((sum, val) => sum + val, 0) / values.length;
+}
--- a/cli/package-lock.json
+++ b/cli/package-lock.json
@@ -10,12 +10,9 @@
      "dependencies": {
        "axios": "^1.6.2",
        "chalk": "^4.1.2",
-        "cli-table3": "^0.6.3",
        "commander": "^14.0.0",
        "dotenv": "^16.3.1",
-        "ora": "^5.4.1",
-        "uuid": "^9.0.0",
-        "yaml": "^2.3.4"
+        "uuid": "^9.0.0"
      },
      "bin": {
        "claude-hub": "claude-hub"
@@ -24,12 +21,16 @@
        "@types/jest": "^29.5.0",
        "@types/mock-fs": "^4.13.4",
        "@types/node": "^20.10.0",
+        "@types/ora": "^3.1.0",
        "@types/uuid": "^9.0.8",
+        "cli-table3": "^0.6.5",
        "jest": "^29.5.0",
        "mock-fs": "^5.5.0",
+        "ora": "^8.2.0",
        "ts-jest": "^29.1.0",
        "ts-node": "^10.9.2",
-        "typescript": "^5.3.2"
+        "typescript": "^5.3.2",
+        "yaml": "^2.8.0"
      }
    },
    "node_modules/@ampproject/remapping": {
@@ -501,6 +502,7 @@
      "version": "1.5.0",
      "resolved": "https://registry.npmjs.org/@colors/colors/-/colors-1.5.0.tgz",
      "integrity": "sha512-ooWCrlZP11i8GImSjTHYHLkvFDP48nS4+204nGb1RiX/WXYHmJA2III9/e2DWVabCESdW7hBAEzHRqUn9OUVvQ==",
+      "dev": true,
      "optional": true,
      "engines": {
        "node": ">=0.1.90"
@@ -1016,6 +1018,7 @@
      "resolved": "https://registry.npmjs.org/@types/mock-fs/-/mock-fs-4.13.4.tgz",
      "integrity": "sha512-mXmM0o6lULPI8z3XNnQCpL0BGxPwx1Ul1wXYEPBGl4efShyxW2Rln0JOPEWGyZaYZMM6OVXM/15zUuFMY52ljg==",
      "dev": true,
+      "license": "MIT",
      "dependencies": {
        "@types/node": "*"
      }
@@ -1029,6 +1032,16 @@
        "undici-types": "~6.19.2"
      }
    },
+    "node_modules/@types/ora": {
+      "version": "3.1.0",
+      "resolved": "https://registry.npmjs.org/@types/ora/-/ora-3.1.0.tgz",
+      "integrity": "sha512-4e15N42qhHRlxyP5SpX9fK3q4tXvEkdmGdof2DZ0mqPu7glrNT8cs9bbI73NhwEGApq1TSXhs2aFmn19VCTwCQ==",
+      "dev": true,
+      "license": "MIT",
+      "dependencies": {
+        "@types/node": "*"
+      }
+    },
    "node_modules/@types/stack-utils": {
      "version": "2.0.3",
      "resolved": "https://registry.npmjs.org/@types/stack-utils/-/stack-utils-2.0.3.tgz",
@@ -1099,6 +1112,7 @@
      "version": "5.0.1",
      "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
      "integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
+      "dev": true,
      "engines": {
        "node": ">=8"
      }
@@ -1282,35 +1296,6 @@
      "integrity": "sha512-3oSeUO0TMV67hN1AmbXsK4yaqU7tjiHlbxRDZOpH0KW9+CeX4bRAaX0Anxt0tx2MrpRpWwQaPwIlISEJhYU5Pw==",
      "dev": true
    },
-    "node_modules/base64-js": {
-      "version": "1.5.1",
-      "resolved": "https://registry.npmjs.org/base64-js/-/base64-js-1.5.1.tgz",
-      "integrity": "sha512-AKpaYlHn8t4SVbOHCy+b5+KKgvR4vrsD8vbvrbiQJps7fKDTkjkDry6ji0rUJjC0kzbNePLwzxq8iypo41qeWA==",
-      "funding": [
-        {
-          "type": "github",
-          "url": "https://github.com/sponsors/feross"
-        },
-        {
-          "type": "patreon",
-          "url": "https://www.patreon.com/feross"
-        },
-        {
-          "type": "consulting",
-          "url": "https://feross.org/support"
-        }
-      ]
-    },
-    "node_modules/bl": {
-      "version": "4.1.0",
-      "resolved": "https://registry.npmjs.org/bl/-/bl-4.1.0.tgz",
-      "integrity": "sha512-1W07cM9gS6DcLperZfFSj+bWLtaPGSOHWhPiGzXmvVJbRLdG82sH/Kn8EtW1VqWVA54AKf2h5k5BbnIbwF3h6w==",
-      "dependencies": {
-        "buffer": "^5.5.0",
-        "inherits": "^2.0.4",
-        "readable-stream": "^3.4.0"
-      }
-    },
    "node_modules/brace-expansion": {
      "version": "1.1.11",
      "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-1.1.11.tgz",
@@ -1386,29 +1371,6 @@
        "node-int64": "^0.4.0"
      }
    },
-    "node_modules/buffer": {
-      "version": "5.7.1",
-      "resolved": "https://registry.npmjs.org/buffer/-/buffer-5.7.1.tgz",
-      "integrity": "sha512-EHcyIPBQ4BSGlvjB16k5KgAJ27CIsHY/2JBmCRReo48y9rQ3MaUzWX3KVlBa4U7MyX02HdVj0K7C3WaB3ju7FQ==",
-      "funding": [
-        {
-          "type": "github",
-          "url": "https://github.com/sponsors/feross"
-        },
-        {
-          "type": "patreon",
-          "url": "https://www.patreon.com/feross"
-        },
-        {
-          "type": "consulting",
-          "url": "https://feross.org/support"
-        }
-      ],
-      "dependencies": {
-        "base64-js": "^1.3.1",
-        "ieee754": "^1.1.13"
-      }
-    },
    "node_modules/buffer-from": {
      "version": "1.1.2",
      "resolved": "https://registry.npmjs.org/buffer-from/-/buffer-from-1.1.2.tgz",
@@ -1511,20 +1473,26 @@
      "dev": true
    },
    "node_modules/cli-cursor": {
-      "version": "3.1.0",
-      "resolved": "https://registry.npmjs.org/cli-cursor/-/cli-cursor-3.1.0.tgz",
-      "integrity": "sha512-I/zHAwsKf9FqGoXM4WWRACob9+SNukZTd94DWF57E4toouRulbCxcUh6RKUEOQlYTHJnzkPMySvPNaaSLNfLZw==",
+      "version": "5.0.0",
+      "resolved": "https://registry.npmjs.org/cli-cursor/-/cli-cursor-5.0.0.tgz",
+      "integrity": "sha512-aCj4O5wKyszjMmDT4tZj93kxyydN/K5zPWSCe6/0AV/AA1pqe5ZBIw0a2ZfPQV7lL5/yb5HsUreJ6UFAF1tEQw==",
+      "dev": true,
+      "license": "MIT",
      "dependencies": {
-        "restore-cursor": "^3.1.0"
+        "restore-cursor": "^5.0.0"
      },
      "engines": {
-        "node": ">=8"
+        "node": ">=18"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/sindresorhus"
      }
    },
    "node_modules/cli-spinners": {
      "version": "2.9.2",
      "resolved": "https://registry.npmjs.org/cli-spinners/-/cli-spinners-2.9.2.tgz",
      "integrity": "sha512-ywqV+5MmyL4E7ybXgKys4DugZbX0FC6LnwrhjuykIjnK9k8OQacQ7axGKnjDXWNhns0xot3bZI5h55H8yo9cJg==",
+      "dev": true,
      "engines": {
        "node": ">=6"
      },
@@ -1536,6 +1504,8 @@
      "version": "0.6.5",
      "resolved": "https://registry.npmjs.org/cli-table3/-/cli-table3-0.6.5.tgz",
      "integrity": "sha512-+W/5efTR7y5HRD7gACw9yQjqMVvEMLBHmboM/kPWam+H+Hmyrgjh6YncVKK122YZkXrLudzTuAukUw9FnMf7IQ==",
+      "dev": true,
+      "license": "MIT",
      "dependencies": {
        "string-width": "^4.2.0"
      },
@@ -1560,14 +1530,6 @@
        "node": ">=12"
      }
    },
-    "node_modules/clone": {
-      "version": "1.0.4",
-      "resolved": "https://registry.npmjs.org/clone/-/clone-1.0.4.tgz",
-      "integrity": "sha512-JQHZ2QMW6l3aH/j6xCqQThY/9OH4D/9ls34cgkUBiEeocRTU04tHfKPBsUK1PqZCUQM7GiA0IIXJSuXHI64Kbg==",
-      "engines": {
-        "node": ">=0.8"
-      }
-    },
    "node_modules/co": {
      "version": "4.6.0",
      "resolved": "https://registry.npmjs.org/co/-/co-4.6.0.tgz",
@@ -1712,17 +1674,6 @@
        "node": ">=0.10.0"
      }
    },
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-      "version": "1.3.0",
-      "resolved": "https://registry.npmjs.org/string_decoder/-/string_decoder-1.3.0.tgz",
-      "integrity": "sha512-hkRX8U1WjJFd8LsDJ2yQ/wWWxaopEsABU1XfkM8A+j0+85JAGppt16cr1Whg6KIbb4okU6Mql6BOj+uup/wKeA==",
-      "dependencies": {
-        "safe-buffer": "~5.2.0"
+    "node_modules/stdin-discarder": {
+      "version": "0.2.2",
+      "resolved": "https://registry.npmjs.org/stdin-discarder/-/stdin-discarder-0.2.2.tgz",
+      "integrity": "sha512-UhDfHmA92YAlNnCfhmq0VeNL5bDbiZGg7sZ2IvPsXubGkiNa9EC+tUTsjBRsYUAz87btI6/1wf4XoVvQ3uRnmQ==",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": ">=18"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/sindresorhus"
      }
    },
    "node_modules/string-length": {
@@ -3814,6 +3890,7 @@
      "version": "4.2.3",
      "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz",
      "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==",
+      "dev": true,
      "dependencies": {
        "emoji-regex": "^8.0.0",
        "is-fullwidth-code-point": "^3.0.0",
@@ -3827,6 +3904,7 @@
      "version": "6.0.1",
      "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
      "integrity": "sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==",
+      "dev": true,
      "dependencies": {
        "ansi-regex": "^5.0.1"
      },
@@ -4105,11 +4183,6 @@
        "browserslist": ">= 4.21.0"
      }
    },
-    "node_modules/util-deprecate": {
-      "version": "1.0.2",
-      "resolved": "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz",
-      "integrity": "sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw=="
-    },
    "node_modules/uuid": {
      "version": "9.0.1",
      "resolved": "https://registry.npmjs.org/uuid/-/uuid-9.0.1.tgz",
@@ -4151,14 +4224,6 @@
        "makeerror": "1.0.12"
      }
    },
-    "node_modules/wcwidth": {
-      "version": "1.0.1",
-      "resolved": "https://registry.npmjs.org/wcwidth/-/wcwidth-1.0.1.tgz",
-      "integrity": "sha512-XHPEwS0q6TaxcvG85+8EYkbiCux2XtWG2mkc47Ng2A77BQu9+DqIOJldST4HgPkuea7dvKSj5VgX3P1d4rW8Tg==",
-      "dependencies": {
-        "defaults": "^1.0.3"
-      }
-    },
    "node_modules/which": {
      "version": "2.0.2",
      "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz",
@@ -4229,6 +4294,8 @@
      "version": "2.8.0",
      "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.8.0.tgz",
      "integrity": "sha512-4lLa/EcQCB0cJkyts+FpIRx5G/llPxfP6VQU5KByHEhLxY3IJCH0f0Hy1MHI8sClTvsIb8qwRJ6R/ZdlDJ/leQ==",
+      "dev": true,
+      "license": "ISC",
      "bin": {
        "yaml": "bin.mjs"
      },
--- a/cli/package.json
+++ b/cli/package.json
@@ -20,22 +20,23 @@
  "dependencies": {
    "axios": "^1.6.2",
    "chalk": "^4.1.2",
-    "cli-table3": "^0.6.3",
    "commander": "^14.0.0",
    "dotenv": "^16.3.1",
-    "ora": "^5.4.1",
-    "uuid": "^9.0.0",
-    "yaml": "^2.3.4"
+    "uuid": "^9.0.0"
  },
  "devDependencies": {
    "@types/jest": "^29.5.0",
    "@types/mock-fs": "^4.13.4",
    "@types/node": "^20.10.0",
+    "@types/ora": "^3.1.0",
    "@types/uuid": "^9.0.8",
+    "cli-table3": "^0.6.5",
    "jest": "^29.5.0",
    "mock-fs": "^5.5.0",
+    "ora": "^8.2.0",
    "ts-jest": "^29.1.0",
    "ts-node": "^10.9.2",
-    "typescript": "^5.3.2"
+    "typescript": "^5.3.2",
+    "yaml": "^2.8.0"
  }
 }
--- a/coverage-combined/lcov.info
+++ b/coverage-combined/lcov.info
--- a/jest.config.js
+++ b/jest.config.js
@@ -26,6 +26,7 @@ module.exports = {
  collectCoverageFrom: [
    'src/**/*.{js,ts}',
    '!src/**/*.d.ts',
+    '!src/types/**/*.ts',
    '!**/node_modules/**',
    '!**/dist/**'
  ],
--- a/package.json
+++ b/package.json
@@ -19,6 +19,7 @@
    "test:coverage": "jest --coverage",
    "test:watch": "jest --watch",
    "test:ci": "jest --ci --coverage --testPathPattern='test/(unit|integration).*\\.test\\.(js|ts)$'",
+    "test:combined-coverage": "./scripts/combine-coverage.js",
    "test:docker": "docker-compose -f docker-compose.test.yml run --rm test",
    "test:docker:integration": "docker-compose -f docker-compose.test.yml run --rm integration-test",
    "test:docker:e2e": "docker-compose -f docker-compose.test.yml run --rm e2e-test",
--- a/scripts/combine-coverage.js
+++ b/scripts/combine-coverage.js
@@ -0,0 +1,88 @@
+#!/usr/bin/env node
+
+const { execSync } = require('child_process');
+const fs = require('fs');
+const path = require('path');
+
+/**
+ * Combine coverage reports from main project and CLI
+ */
+
+// Ensure coverage directories exist
+const mainCoverageDir = path.join(__dirname, '..', 'coverage');
+const cliCoverageDir = path.join(__dirname, '..', 'cli', 'coverage');
+const combinedCoverageDir = path.join(__dirname, '..', 'coverage-combined');
+
+// Create combined coverage directory
+if (!fs.existsSync(combinedCoverageDir)) {
+  fs.mkdirSync(combinedCoverageDir, { recursive: true });
+}
+
+console.log('Generating main project coverage...');
+try {
+  execSync('npm run test:ci', { stdio: 'inherit', cwd: path.join(__dirname, '..') });
+} catch (error) {
+  console.error('Failed to generate main project coverage');
+  process.exit(1);
+}
+
+console.log('\nGenerating CLI coverage...');
+try {
+  execSync('npm run test:coverage', { stdio: 'inherit', cwd: path.join(__dirname, '..', 'cli') });
+} catch (error) {
+  console.error('Failed to generate CLI coverage');
+  process.exit(1);
+}
+
+// Check if both coverage files exist
+const mainLcov = path.join(mainCoverageDir, 'lcov.info');
+const cliLcov = path.join(cliCoverageDir, 'lcov.info');
+
+if (!fs.existsSync(mainLcov)) {
+  console.error('Main project lcov.info not found');
+  process.exit(1);
+}
+
+if (!fs.existsSync(cliLcov)) {
+  console.error('CLI lcov.info not found');
+  process.exit(1);
+}
+
+// Read both lcov files
+const mainLcovContent = fs.readFileSync(mainLcov, 'utf8');
+const cliLcovContent = fs.readFileSync(cliLcov, 'utf8');
+
+// Adjust CLI paths to be relative to project root
+const adjustedCliLcov = cliLcovContent.replace(/SF:src\//g, 'SF:cli/src/');
+
+// Combine lcov files
+const combinedLcov = mainLcovContent + '\n' + adjustedCliLcov;
+
+// Write combined lcov file
+const combinedLcovPath = path.join(combinedCoverageDir, 'lcov.info');
+fs.writeFileSync(combinedLcovPath, combinedLcov);
+
+console.log('\nCombined coverage report written to:', combinedLcovPath);
+
+// Copy coverage-final.json files as well for better reporting
+if (fs.existsSync(path.join(mainCoverageDir, 'coverage-final.json'))) {
+  const mainJson = JSON.parse(fs.readFileSync(path.join(mainCoverageDir, 'coverage-final.json'), 'utf8'));
+  const cliJson = JSON.parse(fs.readFileSync(path.join(cliCoverageDir, 'coverage-final.json'), 'utf8'));
+  
+  // Adjust CLI paths in JSON
+  const adjustedCliJson = {};
+  for (const [key, value] of Object.entries(cliJson)) {
+    const adjustedKey = key.replace(/^src\//, 'cli/src/');
+    adjustedCliJson[adjustedKey] = value;
+  }
+  
+  // Combine JSON coverage
+  const combinedJson = { ...mainJson, ...adjustedCliJson };
+  fs.writeFileSync(
+    path.join(combinedCoverageDir, 'coverage-final.json'),
+    JSON.stringify(combinedJson, null, 2)
+  );
+}
+
+console.log('\nCoverage combination complete!');
+console.log('Upload coverage-combined/lcov.info to Codecov for full project coverage.');
--- a/test/unit/providers/claude/services/SessionManager.test.ts
+++ b/test/unit/providers/claude/services/SessionManager.test.ts
@@ -0,0 +1,323 @@
+import { SessionManager } from '../../../../../src/providers/claude/services/SessionManager';
+import { execSync, spawn } from 'child_process';
+import type { ClaudeSession } from '../../../../../src/types/claude-orchestration';
+
+// Mock child_process
+jest.mock('child_process', () => ({
+  execSync: jest.fn(),
+  spawn: jest.fn()
+}));
+
+// Mock logger
+jest.mock('../../../../../src/utils/logger', () => ({
+  createLogger: () => ({
+    info: jest.fn(),
+    error: jest.fn(),
+    debug: jest.fn()
+  })
+}));
+
+describe('SessionManager', () => {
+  let sessionManager: SessionManager;
+  const mockExecSync = execSync as jest.MockedFunction<typeof execSync>;
+  const mockSpawn = spawn as jest.MockedFunction<typeof spawn>;
+
+  beforeEach(() => {
+    jest.clearAllMocks();
+    sessionManager = new SessionManager();
+
+    // Setup default mocks
+    mockExecSync.mockReturnValue(Buffer.from(''));
+    mockSpawn.mockReturnValue({
+      stdout: { on: jest.fn() },
+      stderr: { on: jest.fn() },
+      on: jest.fn()
+    } as any);
+  });
+
+  describe('createContainer', () => {
+    it('should create a container for a session', async () => {
+      const session: ClaudeSession = {
+        id: 'test-session-123',
+        type: 'analysis',
+        status: 'pending',
+        project: {
+          repository: 'owner/repo',
+          requirements: 'Test requirements',
+          constraints: []
+        },
+        dependencies: [],
+        createdAt: new Date()
+      };
+
+      const containerName = await sessionManager.createContainer(session);
+
+      expect(containerName).toBe('claude-analysis-test-ses');
+      expect(mockExecSync).toHaveBeenCalledWith(expect.stringContaining('docker create'), {
+        stdio: 'pipe'
+      });
+    });
+
+    it('should handle errors when creating container', async () => {
+      const session: ClaudeSession = {
+        id: 'test-session-123',
+        type: 'analysis',
+        status: 'pending',
+        project: {
+          repository: 'owner/repo',
+          requirements: 'Test requirements',
+          constraints: []
+        },
+        dependencies: [],
+        createdAt: new Date()
+      };
+
+      mockExecSync.mockImplementation(() => {
+        throw new Error('Docker error');
+      });
+
+      await expect(sessionManager.createContainer(session)).rejects.toThrow('Docker error');
+    });
+  });
+
+  describe('startSession', () => {
+    it('should start a session with a container', async () => {
+      const session: ClaudeSession = {
+        id: 'test-session-123',
+        type: 'implementation',
+        status: 'pending',
+        containerId: 'container-123',
+        project: {
+          repository: 'owner/repo',
+          requirements: 'Implement feature X',
+          constraints: []
+        },
+        dependencies: [],
+        createdAt: new Date()
+      };
+
+      // Mock spawn to simulate successful execution
+      const mockProcess = {
+        stdout: {
+          on: jest.fn((event, cb) => {
+            if (event === 'data') cb(Buffer.from('Output line'));
+          })
+        },
+        stderr: { on: jest.fn() },
+        on: jest.fn((event, cb) => {
+          if (event === 'close') cb(0);
+        })
+      };
+      mockSpawn.mockReturnValue(mockProcess as any);
+
+      await sessionManager.startSession(session);
+
+      expect(mockExecSync).toHaveBeenCalledWith('docker start container-123', { stdio: 'pipe' });
+      expect(mockSpawn).toHaveBeenCalledWith(
+        'docker',
+        expect.arrayContaining(['exec', '-i', 'container-123', 'claude'])
+      );
+    });
+
+    it('should throw error if session has no container ID', async () => {
+      const session: ClaudeSession = {
+        id: 'test-session-123',
+        type: 'testing',
+        status: 'pending',
+        project: {
+          repository: 'owner/repo',
+          requirements: 'Test requirements',
+          constraints: []
+        },
+        dependencies: [],
+        createdAt: new Date()
+      };
+
+      await expect(sessionManager.startSession(session)).rejects.toThrow(
+        'Session has no container ID'
+      );
+    });
+  });
+
+  describe('getSession', () => {
+    it('should return a session by ID', async () => {
+      const session: ClaudeSession = {
+        id: 'test-session-123',
+        type: 'review',
+        status: 'pending',
+        project: {
+          repository: 'owner/repo',
+          requirements: 'Review code',
+          constraints: []
+        },
+        dependencies: [],
+        createdAt: new Date()
+      };
+
+      await sessionManager.createContainer(session);
+      const retrieved = sessionManager.getSession('test-session-123');
+
+      expect(retrieved).toBeDefined();
+      expect(retrieved?.id).toBe('test-session-123');
+    });
+
+    it('should return undefined for non-existent session', () => {
+      const retrieved = sessionManager.getSession('non-existent');
+      expect(retrieved).toBeUndefined();
+    });
+  });
+
+  describe('getAllSessions', () => {
+    it('should return all sessions', async () => {
+      const session1: ClaudeSession = {
+        id: 'session-1',
+        type: 'analysis',
+        status: 'pending',
+        project: {
+          repository: 'owner/repo1',
+          requirements: 'Analyze',
+          constraints: []
+        },
+        dependencies: [],
+        createdAt: new Date()
+      };
+
+      const session2: ClaudeSession = {
+        id: 'session-2',
+        type: 'implementation',
+        status: 'pending',
+        project: {
+          repository: 'owner/repo2',
+          requirements: 'Implement',
+          constraints: []
+        },
+        dependencies: [],
+        createdAt: new Date()
+      };
+
+      await sessionManager.createContainer(session1);
+      await sessionManager.createContainer(session2);
+
+      const allSessions = sessionManager.getAllSessions();
+      expect(allSessions).toHaveLength(2);
+      expect(allSessions.map(s => s.id)).toEqual(['session-1', 'session-2']);
+    });
+  });
+
+  describe('getOrchestrationSessions', () => {
+    it('should return sessions for a specific orchestration', async () => {
+      const session1: ClaudeSession = {
+        id: 'orch-123-session-1',
+        type: 'analysis',
+        status: 'pending',
+        project: {
+          repository: 'owner/repo',
+          requirements: 'Analyze',
+          constraints: []
+        },
+        dependencies: [],
+        createdAt: new Date()
+      };
+
+      const session2: ClaudeSession = {
+        id: 'orch-123-session-2',
+        type: 'implementation',
+        status: 'pending',
+        project: {
+          repository: 'owner/repo',
+          requirements: 'Implement',
+          constraints: []
+        },
+        dependencies: [],
+        createdAt: new Date()
+      };
+
+      const otherSession: ClaudeSession = {
+        id: 'orch-456-session-1',
+        type: 'testing',
+        status: 'pending',
+        project: {
+          repository: 'owner/repo',
+          requirements: 'Test',
+          constraints: []
+        },
+        dependencies: [],
+        createdAt: new Date()
+      };
+
+      await sessionManager.createContainer(session1);
+      await sessionManager.createContainer(session2);
+      await sessionManager.createContainer(otherSession);
+
+      const orchSessions = sessionManager.getOrchestrationSessions('orch-123');
+      expect(orchSessions).toHaveLength(2);
+      expect(orchSessions.map(s => s.id)).toEqual(['orch-123-session-1', 'orch-123-session-2']);
+    });
+  });
+
+  describe('queueSession', () => {
+    it('should start session immediately if no dependencies', async () => {
+      const session: ClaudeSession = {
+        id: 'test-session',
+        type: 'analysis',
+        status: 'pending',
+        containerId: 'container-123',
+        project: {
+          repository: 'owner/repo',
+          requirements: 'Analyze',
+          constraints: []
+        },
+        dependencies: [],
+        createdAt: new Date()
+      };
+
+      const mockProcess = {
+        stdout: { on: jest.fn() },
+        stderr: { on: jest.fn() },
+        on: jest.fn((event, cb) => {
+          if (event === 'close') cb(0);
+        })
+      };
+      mockSpawn.mockReturnValue(mockProcess as any);
+
+      await sessionManager.queueSession(session);
+
+      expect(mockExecSync).toHaveBeenCalledWith('docker start container-123', { stdio: 'pipe' });
+    });
+
+    it('should queue session if dependencies not met', async () => {
+      const depSession: ClaudeSession = {
+        id: 'dep-session',
+        type: 'analysis',
+        status: 'running',
+        project: {
+          repository: 'owner/repo',
+          requirements: 'Analyze',
+          constraints: []
+        },
+        dependencies: [],
+        createdAt: new Date()
+      };
+
+      const session: ClaudeSession = {
+        id: 'test-session',
+        type: 'implementation',
+        status: 'pending',
+        containerId: 'container-123',
+        project: {
+          repository: 'owner/repo',
+          requirements: 'Implement',
+          constraints: []
+        },
+        dependencies: ['dep-session'],
+        createdAt: new Date()
+      };
+
+      await sessionManager.createContainer(depSession);
+      await sessionManager.queueSession(session);
+
+      // Should not start immediately
+      expect(mockSpawn).not.toHaveBeenCalled();
+    });
+  });
+});
--- a/test/unit/providers/github/handlers/IssueHandler.test.ts
+++ b/test/unit/providers/github/handlers/IssueHandler.test.ts
@@ -0,0 +1,131 @@
+import { IssueHandler } from '../../../../../src/providers/github/handlers/IssueHandler';
+import { WebhookProcessor } from '../../../../../src/core/webhook/WebhookProcessor';
+import type { IssuesEvent } from '@octokit/webhooks-types';
+
+// Mock dependencies
+jest.mock('../../../../../src/utils/logger', () => ({
+  createLogger: () => ({
+    info: jest.fn(),
+    error: jest.fn(),
+    debug: jest.fn(),
+    warn: jest.fn()
+  })
+}));
+
+jest.mock('../../../../../src/utils/secureCredentials', () => ({
+  SecureCredentials: jest.fn().mockImplementation(() => ({
+    loadCredentials: jest.fn(),
+    getCredential: jest.fn().mockReturnValue('mock-value')
+  })),
+  secureCredentials: {
+    loadCredentials: jest.fn(),
+    getCredential: jest.fn().mockReturnValue('mock-value')
+  }
+}));
+
+jest.mock('../../../../../src/services/claudeService');
+jest.mock('../../../../../src/services/githubService');
+
+const claudeService = require('../../../../../src/services/claudeService');
+const githubService = require('../../../../../src/services/githubService');
+
+describe('IssueHandler', () => {
+  let handler: IssueHandler;
+  let processor: WebhookProcessor;
+
+  beforeEach(() => {
+    jest.clearAllMocks();
+    handler = new IssueHandler();
+    processor = new WebhookProcessor({
+      webhookPath: '/test',
+      secret: 'test-secret'
+    });
+  });
+
+  describe('handleIssue', () => {
+    const mockEvent: IssuesEvent = {
+      action: 'opened',
+      issue: {
+        id: 123,
+        number: 1,
+        title: 'Test Issue',
+        body: 'This is a test issue about authentication and API integration',
+        labels: [],
+        state: 'open',
+        user: {
+          login: 'testuser',
+          id: 1
+        },
+        created_at: new Date().toISOString(),
+        updated_at: new Date().toISOString()
+      },
+      repository: {
+        id: 456,
+        name: 'test-repo',
+        full_name: 'owner/test-repo',
+        owner: {
+          login: 'owner',
+          id: 2
+        },
+        private: false
+      },
+      sender: {
+        login: 'testuser',
+        id: 1
+      }
+    } as any;
+
+    it('should analyze and label new issues', async () => {
+      githubService.addLabelsToIssue = jest.fn().mockResolvedValue(undefined);
+      claudeService.analyzeIssueForLabels = jest.fn().mockResolvedValue({
+        priority: 'medium',
+        type: 'feature',
+        complexity: 'moderate',
+        component: 'api,auth'
+      });
+
+      await handler.handleIssue(mockEvent, processor);
+
+      expect(claudeService.analyzeIssueForLabels).toHaveBeenCalledWith(
+        'owner/test-repo',
+        1,
+        'Test Issue',
+        'This is a test issue about authentication and API integration'
+      );
+
+      expect(githubService.addLabelsToIssue).toHaveBeenCalledWith('owner/test-repo', 1, [
+        'priority:medium',
+        'type:feature',
+        'complexity:moderate',
+        'component:api',
+        'component:auth'
+      ]);
+    });
+
+    it('should handle errors gracefully', async () => {
+      claudeService.analyzeIssueForLabels = jest
+        .fn()
+        .mockRejectedValue(new Error('Analysis failed'));
+
+      await expect(handler.handleIssue(mockEvent, processor)).resolves.not.toThrow();
+    });
+
+    it('should skip non-opened events', async () => {
+      const editEvent = { ...mockEvent, action: 'edited' } as IssuesEvent;
+
+      await handler.handleIssue(editEvent, processor);
+
+      expect(claudeService.analyzeIssueForLabels).not.toHaveBeenCalled();
+      expect(githubService.addLabelsToIssue).not.toHaveBeenCalled();
+    });
+
+    it('should handle empty label analysis', async () => {
+      claudeService.analyzeIssueForLabels = jest.fn().mockResolvedValue({});
+      githubService.addLabelsToIssue = jest.fn();
+
+      await handler.handleIssue(mockEvent, processor);
+
+      expect(githubService.addLabelsToIssue).toHaveBeenCalledWith('owner/test-repo', 1, []);
+    });
+  });
+});